Package: RChronoModel 0.4

RChronoModel: Post-Processing of the Markov Chain Simulated by ChronoModel or Oxcal

Provides a list of functions for the statistical analysis and the post-processing of the Markov Chains simulated by ChronoModel (see <http://www.chronomodel.fr> for more information). ChronoModel is a friendly software to construct a chronological model in a Bayesian framework. Its output is a sampled Markov chain from the posterior distribution of dates component the chronology. The functions can also be applied to the analyse of mcmc output generated by Oxcal software.

Authors:Anne Philippe and Marie-Anne Vibet

RChronoModel_0.4.tar.gz
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RChronoModel.pdf |RChronoModel.html✨
RChronoModel/json (API)

# Install 'RChronoModel' in R:
install.packages('RChronoModel', repos = c('https://philippe-a.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.41 score 26 scripts 138 downloads 24 exports 40 dependencies

Last updated 8 years agofrom:ef65e2d468. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 14 2024
R-4.5-winOKDec 14 2024
R-4.5-linuxOKDec 14 2024
R-4.4-winOKDec 14 2024
R-4.4-macOKDec 14 2024
R-4.3-winOKDec 14 2024
R-4.3-macOKDec 14 2024

Exports:CreateMinMaxGroupCredibleIntervalDatesHiatusImportCSVMarginalPlotMarginalProbaMarginalStatisticsMultiCredibleIntervalMultiDatesPlotMultiHPDMultiPhasePlotMultiPhasesGapMultiPhasesTransitionMultiPhaseTimeRangeMultiSuccessionPlotPhaseDurationPlotPhasePlotPhasesGapPhaseStatisticsPhasesTransitionPhaseTimeRangeSuccessionPlotTempoActivityPlotTempoPlot

Dependencies:ashclicolorspacefansifarverFNNggplot2gluegtablehdrcdeisobandkernlabKernSmoothkslabelinglatticelifecyclelocfitmagrittrMASSMatrixmclustmgcvmulticoolmunsellmvtnormnlmepillarpkgconfigpracmaR6RColorBrewerRcpprlangscalestibbleutf8vctrsviridisLitewithr

Readme and manuals

Help Manual

Help pageTopics
Constructing the minimum and the maximum for a group of dates(phase)CreateMinMaxGroup
Bayesian credible intervalCredibleInterval
Test for the existence of a hiatus between two parametersDatesHiatus
EventsEvents
Importing a CSV file containing the output of the MCMC algorithmImportCSV
Plot of a marginal posterior densityMarginalPlot
Bayesian test for anteriority / posteriority between two parametersMarginalProba
Marginal summary statisticsMarginalStatistics
Bayesian credible intervals for a series of datesMultiCredibleInterval
Plot of the endpoints of credible intervals or HPD intervals of a series of datesMultiDatesPlot
Bayesian highest posterior density regions for a series of MCMC chainsMultiHPD
Plot of the marginal posterior densities of several phasesMultiPhasePlot
Gap/Hiatus between a succession of phases (for phases in temporal order constraint)MultiPhasesGap
Transition range for a succession of phases (for phases in temporal order constraint)MultiPhasesTransition
Phase Time Range for multiple phasesMultiPhaseTimeRange
Successive Phases Density Plots (for phases in temporal order constraint)MultiSuccessionPlot
Plot of the marginal posterior densities of the duration of a phasePhaseDurationPlot
Plot of the marginal posterior densities of a phasePhasePlot
PhasesPhases
Gap or Hiatus between two successive phases (for phases in temporal order constraint)PhasesGap
Summary statistics for a phasePhaseStatistics
Transition range between two successive phases (for phases in temporal order constraint)PhasesTransition
Phase Time RangePhaseTimeRange
Density Plots of two successive phases (for phases in temporal order constraint)SuccessionPlot
Plot of the activity of eventsTempoActivityPlot
Plot of the occurence of eventsTempoPlot